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FAARC: Fewshots Approach to Article Classification
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This repo contains the code to analyse the data for assemblies manuscript
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BioBert model trained on EPMC dataset for NER task
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This project defines a delayed job that runs biological sequence searches (BLAST).
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Contenxtual Annotations Pipeline with Tagging and Linking (CAPITAL)
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CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.
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This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens
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ChEBI automatic cross references for external sources
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ChEBI database management
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ChEBI data in different formats: TSV, SDF and SQL Dumps
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Project to perform the data indexation process to the ChEBI platform
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Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.
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Django package containing chebi models.
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Tools to load data into the ChEMBl Elastic Search cluster, and replicate it.
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