Project to perform the data indexation process to the ChEBI platform
A nextflow pipeline for polygenic score calculation
Manuscript submission system project (Europe PMC plus)
Deployed on https://latest.visual-framework.dev/ and https://stable.visual-framework.dev/
NOTE - DO NOT COMMIT ANYTHING IN THIS REPO, THIS IS MIRROR REPO OF GITHUB. PLEASE COMMIT CHANGES IN GITHUB ONLY.
Frontend code for the new version of ChEBI
Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.
File parsing and writing code for Ensembl
Language agnostic RESTful data access to Ensembl data over HTTP
RNAcentral website source code
ETL to migrate data from the old database to the new one
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
This is the codebase for PDBe-KB REST API service
The Ensembl Core Perl API and SQL schema
Miscellaneous R scripts to do: clone analysis via GBC, gene expression analysis on Seurat, cell-cell interactions analysis with CellPhoneDb, gene network inference with SCENIC, demultiplexing with MULTI-Seq barcodes