In this repository, I am going to share all the data and codes required to reproduce my library gene selection steps for the 2D CRISPR Project (Colorectal and Breast cancer cell lines)
Extract groups of sequences sharing the same barcode using a graph approach
CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.
DIA-reanalysis pipeline code and results
Automated container for Analysis of High Throughput Sequencing Data
This package complements the performance evaluation for the manuscript entitled "Use of viral motif mimicry improves the proteome-wide discovery of human linear motifs"
IMPC statistical pipeline docker image
Docker files for Metagenomics Bioinformatics MGnify session.
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Miscellaneous R scripts to do: clone analysis via GBC, gene expression analysis on Seurat, cell-cell interactions analysis with CellPhoneDb, gene network inference with SCENIC, demultiplexing with MULTI-Seq barcodes