input_id for hive jobfactory instances has changed to input_id_template. reflecting this

modules/Bio/EnsEMBL/Pipeline/PipeConfig/FlatfileChecker_conf.pm

@@ -44,7 +44,7 @@ sub pipeline_analyses {
         inputcmd => 'find '.$self->o('base_path').q{ -type f -name '*.dat.gz'},
         column_names => ['file'],
         randomize => 1,
-        input_id => '{ file => "#file#" }'
+        input_id_template => '{ file => "#file#" }'
       },
       -input_ids  => [ {} ],
       -flow_into  => {

modules/Bio/EnsEMBL/Pipeline/PipeConfig/Flatfile_conf.pm

@@ -70,7 +70,7 @@ sub pipeline_analyses {
         -module     => 'Bio::EnsEMBL::Pipeline::Flatfile::DumpTypeFactory',
         -parameters => {
           types => $self->o('types'),
-          input_id => { species => '#species#', type => '#type#' },
+          input_id_template => '{ species => "#species#", type => "#type#" }',
           fan_branch_code => 2
         },
         -flow_into  => { 2 => ['DumpFlatfile', 'ChecksumGenerator'] },