Commits · 5cb1771dcfbcaac15710236536639efb7f9c4142 · ensembl-gh-mirror / ensembl-hive · GitLab

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This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated 22 minutes ago.

Mar 07, 2012
- a Bio::Seq example factory Runnable and a matching PipeConfig file · 5cb1771d
  Leo Gordon authored 13 years ago
  
  5cb1771d
Mar 01, 2012
- improved STDOUT/STDERR redirection into files; removal of job logs on success · f0edaecf
  Leo Gordon authored 13 years ago
  
  f0edaecf
- a special module to deal with stacks of filehandle redirection · 2edfa351
  Leo Gordon authored 13 years ago
  
  2edfa351
Feb 24, 2012
- pass debug level parameter from beekeeper.pl to runWorker.pl · 35b2e6ec
  Leo Gordon authored 13 years ago
  
  35b2e6ec
Feb 23, 2012
- bugfix: only store values that have been set - avoid overriding defaults · 48f302a0
  Leo Gordon authored 13 years ago
  
  48f302a0
Feb 20, 2012
- attempt to display each funnel below its fan · e28bbc00
  Leo Gordon authored 13 years ago
  
  e28bbc00
Feb 16, 2012
- diagram tool no longer generates unnecessarily broken edges · 54252abc
  Leo Gordon authored 13 years ago
  
  54252abc
Feb 15, 2012
- restrict to DEAD workers only · ac91783e
  Leo Gordon authored 13 years ago
  
  ac91783e
- documentation and better user interface (dumping and undumping supported) · 02313941
  Leo Gordon authored 13 years ago
  
  02313941
Feb 14, 2012
- turned mem and swap into numeric columns; careful with units! · 44f04b93
  Leo Gordon authored 13 years ago
  
  44f04b93
- post-mortem loader of worker memory usage information from the LSF · d385ed7c
  Leo Gordon authored 13 years ago
  
  d385ed7c
- Pipeline parameters cannot take undefined values. Warn and force into 0 · 579e38a1
  Leo Gordon authored 13 years ago
  
  579e38a1
Feb 10, 2012
- added changelog for rel.66 · 36a2e1a4
  Leo Gordon authored 13 years ago
  
  lg4_post_rel_66_20120210
  
  36a2e1a4
Jan 31, 2012
- an optimization: do not touch analysis_stats when job.status or job.analysis is not changing · ac793670
  Leo Gordon authored 13 years ago
  
  ac793670
Jan 20, 2012
- changes for rel.66 · 759a38f1
  Leo Gordon authored 13 years ago
  
  759a38f1
Dec 08, 2011
- checked in by mistake last time; took back the changes now · 153d7ccd
  Leo Gordon authored 13 years ago
  
  153d7ccd
- Removed maximise_concurrency and added analysis_stats.priority to guide the... · 26a2ced3
  Leo Gordon authored 13 years ago
```
Removed maximise_concurrency and added analysis_stats.priority to guide the scheduler; improved scheduler and LSF meadow
```
  26a2ced3
Nov 29, 2011
- An extension to the dataflow-rule-driven semaphores ('2->A', '3->A' and 'A->1' notation) · 4ce3539f
  Leo Gordon authored 13 years ago
  
  4ce3539f
- removed 'sema_fan_branch_code' parameter since you can now set up a semaphored... · 8ff11761
  Leo Gordon authored 13 years ago
```
removed 'sema_fan_branch_code' parameter since you can now set up a semaphored group via PipeConfig' language
```
  8ff11761
Nov 28, 2011
- no need to check for semaphores when state is already DONE or PASSED_ON · 48b5f0e2
  Leo Gordon authored 13 years ago
  
  48b5f0e2
- making sure semaphores are correctly propagated through gc_dataflow and PASSED_ON state · 61be99bb
  Leo Gordon authored 13 years ago
  
  61be99bb
Nov 25, 2011
- allow more than one input_id_template per analysis · a7e0f2de
  Leo Gordon authored 13 years ago
  
  a7e0f2de
Nov 24, 2011
- bugfix: funnel_branch is no longer initialized to 1 when undef · 7561f9a8
  Leo Gordon authored 13 years ago
  
  7561f9a8
- bugfix: correct counting of total_job_number in non-trigger mode · 40eab739
  Leo Gordon authored 13 years ago
  
  40eab739
- bugfix - branch_name_2_code should return 1 on undef · 373b7d73
  Leo Gordon authored 13 years ago
  
  373b7d73
Nov 23, 2011
- show the dataflow-generated semaphores on the diagram · b0c31a30
  Leo Gordon authored 13 years ago
  
  b0c31a30
- bugfix: object adaptor now correctly reconstructs dbID · 26d2e706
  Leo Gordon authored 13 years ago
  
  26d2e706
- merge the two ways of running the LongMult pipeline into one · c2eb1bf5
  Leo Gordon authored 13 years ago
  
  c2eb1bf5
- integrated semaphored fans/funnels into dataflow rules · 486e481c
  Leo Gordon authored 13 years ago
  
  486e481c
Nov 22, 2011
- this value was returned but never used · 19897cc0
  Leo Gordon authored 13 years ago
  
  19897cc0
Nov 21, 2011
- remove the per-worker batch_size method · d67bcffb
  Leo Gordon authored 13 years ago
  
  d67bcffb
- remove the per-worker batch_size flag from scripts · 1ca856a8
  Leo Gordon authored 13 years ago
  
  1ca856a8
Nov 17, 2011
- make num_running_workers updatable by triggers + better updates during worker check-in · 76b1900d
  Leo Gordon authored 13 years ago
  
  76b1900d
Nov 10, 2011
- these four methods were neither used by Hive nor by Compara code · 2d5ff61c
  Leo Gordon authored 13 years ago
  
  2d5ff61c
Nov 04, 2011
- DBI with versions older than 1.6 are not supported · e02eef61
  Leo Gordon authored 13 years ago
  
  e02eef61
Oct 15, 2011
- release 65 · 4d42dc24
  Leo Gordon authored 13 years ago
  
  4d42dc24
Sep 23, 2011
- An example pipeline that turns lines of a file into jobs and runs them on the farm · b1fa8999
  Leo Gordon authored 13 years ago
  
  b1fa8999
Sep 20, 2011
- extend for other schema types · 7059196a
  Leo Gordon authored 13 years ago
  
  7059196a
Sep 09, 2011
- analysis_data may be overcrowded with inserts during dataflow with input_id... · e2a13003
  Leo Gordon authored 13 years ago
```
analysis_data may be overcrowded with inserts during dataflow with input_id longer than 255 characters
```
  e2a13003
Sep 05, 2011
- couple of typos · c3437cc3
  Leo Gordon authored 13 years ago
  
  c3437cc3