This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git.
Pull mirroring updated .
- Jan 16, 2015
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Leo Gordon authored
Conflicts: modules/Bio/EnsEMBL/Hive/Worker.pm
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Leo Gordon authored
Conflicts: modules/Bio/EnsEMBL/Hive/Worker.pm
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Leo Gordon authored
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Leo Gordon authored
Conflicts: modules/Bio/EnsEMBL/Hive/Worker.pm
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- Jan 05, 2015
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Matthieu Muffato authored
* version/2.1: cause_of_death can be undefined here (for local meadows, for instance)
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Matthieu Muffato authored
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- Dec 22, 2014
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Matthieu Muffato authored
* version/2.1: Backported the recent changes from Ensembl's DBConnection
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Matthieu Muffato authored
* version/2.0: Backported the recent changes from Ensembl's DBConnection
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Matthieu Muffato authored
- use placeholders in "do" commands
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- Nov 05, 2014
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
bugfix [to ee51e74e] : restore the password-hiding functionality between beekeeper.pl and runWorker.pl
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- Oct 29, 2014
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Matthieu Muffato authored
* version/2.1: The main index is docs/index.html Conflicts: docs/scripts/index.html
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Matthieu Muffato authored
* version/2.0: The main index is docs/index.html
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Matthieu Muffato authored
* version/1.9: The main index is docs/index.html
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Matthieu Muffato authored
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- Oct 27, 2014
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Matthieu Muffato authored
- always write the sequence to the current seqio - fix for creating lots of empty output files - fix warning "Use of uninitialized value in subroutine entry"
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Matthieu Muffato authored
- always write the sequence to the current seqio - fix for creating lots of empty output files - fix warning "Use of uninitialized value in subroutine entry"
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Matthieu Muffato authored
- always write the sequence to the current seqio - fix for creating lots of empty output files - fix warning "Use of uninitialized value in subroutine entry"
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Matthieu Muffato authored
PR #5
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Roy Storey authored
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Roy Storey authored
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Roy Storey authored
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- Oct 25, 2014
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Matthieu Muffato authored
bugfix: jobs could not trigger MEMLIMIT events bugfix: release the unfinished batch if the worker is contaminated
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Matthieu Muffato authored
(and probably RUNLIMIT as well) The problem was in Queen::register_worker_death(). The code fetches the current role, finalizes it, and then updates the worker table. The role that is fetched from the database with fetch_last_unfinished_by_worker_id() is not connected to any workers and later, when AnalysisJobAdaptor::release_undone_jobs_from_role() needs to know the cause of death and the number of work done by the worker, the role would load another instance of the worker using the information currently stored in the database, that is: before it has been updated. Hence, the code was complaining that cause_of_death was not populated. By associating the role to the worker, we allow the method to read the existing information
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Matthieu Muffato authored
This is done by setting "self_burial" to 0
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- Oct 21, 2014
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Leo Gordon authored
pulled in from version/2.1 : bugfix (long-standing) : make sure foreign jobs are created in the right database
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Leo Gordon authored
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- Oct 20, 2014
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Matthieu Muffato authored
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- Oct 17, 2014
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Leo Gordon authored
bugfix: reload the list_of_analyses before each iteration of beekeeper, to be up to date with any changes
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Matthieu Muffato authored
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Matthieu Muffato authored
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- Oct 16, 2014
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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