Commits · 945f227bbe8d3b142b3b58747cbfb06be3eefea9 · ensembl-gh-mirror / ensembl-hive · GitLab

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This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated 15 minutes ago.

Oct 15, 2014
- Fix the db_cmd usage for eHive 2.2 · 945f227b
  Matthieu Muffato authored 10 years ago
  
  945f227b
- SystemCmd should also use arrays in system() · 0d9dfe4a
  Matthieu Muffato authored 10 years ago
  
  0d9dfe4a
- Update the MPI guide and add an entry to index.html · 715e01a3
  Matthieu Muffato authored 10 years ago
  
  715e01a3
- First version of the MPI How-to guide · 998a4eee
  Mateus Patricio authored 10 years ago and Matthieu Muffato committed 10 years ago
  
  998a4eee
- check that doxygen is installed and is not too fresh · ddad924b
  Leo Gordon authored 10 years ago
  
  ddad924b
- included running the new version of sql2html, currently injecting a new hive_schema.hdr file · 3272a448
  Leo Gordon authored 10 years ago
  
  3272a448
- fixing the css to retain compatibility with the new version of sql2html.pl · 6cc80239
  Leo Gordon authored 10 years ago
  
  6cc80239
- the static doxygen config is no longer needed; superseded by dynamic version in make_docs.pl · dba17b09
  Leo Gordon authored 10 years ago
  
  dba17b09
- only changed reference to the new ehive_doc.cssi in comments, this is not a schema change! · 72aa8092
  Leo Gordon authored 10 years ago
  
  72aa8092
- a new script to automate generation of docs · 629cbe7f
  Leo Gordon authored 10 years ago
  
  629cbe7f
- removed eHive version and self-reference to index.html · a1b1873d
  Leo Gordon authored 10 years ago
  
  a1b1873d
- changed __END__ to __DATA__ to match other scripts · 5000b187
  Leo Gordon authored 10 years ago
  
  5000b187
- moved most of the code into the main() sub · e00aefe0
  Leo Gordon authored 10 years ago
  
  e00aefe0
- updated docs: -reset_failed_jobs instead of deprecated -reset_failed_jobs_for_analysis · 58d7130f
  Leo Gordon authored 10 years ago
  
  58d7130f
Oct 13, 2014
- removed a section on PipeConfig contents and hot-linked to the scripts documentation · bba26b52
  Leo Gordon authored 10 years ago
  
  bba26b52
Oct 10, 2014
- added a doc about running and monitoring an eHive pipeline · 9a6604fa
  Leo Gordon authored 10 years ago
  
  9a6604fa
Oct 07, 2014
- removed the old substitution syntax example and added expression examples · 3a43f351
  Leo Gordon authored 10 years ago
  
  3a43f351
- stopped supporting the old $alpha substitution syntax and switched to new #alpha# syntax · 028a3967
  Leo Gordon authored 10 years ago
  
  028a3967
- bugfix : fixed an invisible typo · 24019c73
  Leo Gordon authored 10 years ago
  
  24019c73
- pulled in bugfix [to ENSCOMPARASW-166] : standaloneJob prints the error... · 94470751
  Leo Gordon authored 10 years ago
```
pulled in bugfix [to ENSCOMPARASW-166] : standaloneJob prints the error message and exits with error code=1
```
  94470751
- bugfix [to ENSCOMPARASW-166 ] : standaloneJob prints the error message and exits with error code=1 · 3ed48903
  Leo Gordon authored 10 years ago
  
  3ed48903
- Switched to running array-version of exec() to avoid extra quoting of parameters -- thanks, Lel! · 7499fc2f
  Leo Gordon authored 10 years ago
  
  7499fc2f
Oct 06, 2014
- API change: Limiter::preliminary_offer reports hitting the limit; produce... · 2c8d2c6a
  Leo Gordon authored 10 years ago
```
API change: Limiter::preliminary_offer reports hitting the limit; produce detailed output of negotiations
```
  2c8d2c6a
- deprecated -logic_name and -analysis_id and simplified the specialization code · 00a1638b
  Leo Gordon authored 10 years ago
  
  00a1638b
- report number of analyses discarded as not needing Workers · b1ccf212
  Leo Gordon authored 10 years ago
  
  b1ccf212
- API change: last line of specialization log_buffer ends up in log_message table · 93839b9b
  Leo Gordon authored 10 years ago
  
  93839b9b
Oct 03, 2014
- introduced the concept of original_capacity() · d7a042ce
  Leo Gordon authored 10 years ago
  
  d7a042ce
- reporting the command line being executed in a standard form · c65e87f3
  Leo Gordon authored 10 years ago
  
  c65e87f3
- pretty-printing Scheduler's messages via scheduler_say() · a32bc0ab
  Leo Gordon authored 10 years ago
  
  a32bc0ab
- [re]specialization message split into two halves, to wrap around the decision making log · 9ddc83e2
  Leo Gordon authored 10 years ago
  
  9ddc83e2
- more decision-making explained through log_buffer messages · ba49fd68
  Leo Gordon authored 10 years ago
  
  ba49fd68
Oct 01, 2014
- API change: schedule_workers() now also returns the "plan" used by... · b522a5ff
  Leo Gordon authored 10 years ago
```
API change: schedule_workers() now also returns the "plan" used by suggest_analysis_to_specialize_a_worker(); only one return format for schedule_workers().
```
  b522a5ff
- API change: turn log_buffer into an array instead of a growing string · 6451e1d3
  Leo Gordon authored 10 years ago
  
  6451e1d3
- since safe_sync may or may not work, return the success indicator · f87a456d
  Leo Gordon authored 10 years ago
  
  f87a456d
Sep 30, 2014
- pulled in from version/2.1 : bugfix: added checking dataflow targets for fetchability · 413d2a1a
  Leo Gordon authored 10 years ago
  
  413d2a1a
- bugfix: added checking dataflow targets for fetchability · 6c7d78de
  Leo Gordon authored 10 years ago
  
  6c7d78de
- experiment: assume the Worker parameter is always valid and see where it fails · c7d37a45
  Leo Gordon authored 10 years ago
  
  c7d37a45
Sep 29, 2014
- API and command line option change: -reset_failed_jobs and -reset_all_jobs now... · ea64bcfb
  Leo Gordon authored 10 years ago
```
API and command line option change: -reset_failed_jobs and -reset_all_jobs now work with -analyses_pattern
```
  ea64bcfb
Sep 26, 2014
- pulled in from version/2.1 : restructured specialization, finalization and cleanup · 5bf87b7f
  Leo Gordon authored 10 years ago
  
  5bf87b7f
- restructured specialization, finalization and cleanup · c3b85902
  Leo Gordon authored 10 years ago
  
  c3b85902