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- Aug 07, 2008
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Andreas Kusalananda Kähäri authored
no seq_region, so exclude from hack in generic_fetch().
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Andreas Kusalananda Kähäri authored
If called for a Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor object, add the seq_region and coord_system tables to the table list and join the main feature table to coord_system.species_id through the seq_region table.
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Andreas Kusalananda Kähäri authored
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Daniel Rios authored
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- Aug 06, 2008
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Daniel Rios authored
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Daniel Rios authored
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- Aug 05, 2008
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Glenn Proctor authored
Don't delete the GeneGC entry from attrib_type, since if it is deleted it will be re-created later in the script with a different attrib_type_id, which will be inconsistent with that in the attrib_type.txt file.
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- Aug 04, 2008
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Ian Longden authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
Added name and GO term projections for 6 new species - dolphin, hyrax, tariser, megabat, kangaroo rat, alpaca.
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Glenn Proctor authored
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- Aug 03, 2008
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Glenn Proctor authored
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Glenn Proctor authored
Add BINARY flag to meta.meta_value to make it case sensitive when doing UNIQUE comparisions (especially for Gallus/gallus)
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- Aug 02, 2008
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ens-stephenf authored
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- Aug 01, 2008
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Glenn Proctor authored
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Glenn Proctor authored
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Eugene Kulesha authored
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Eugene Kulesha authored
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- Jul 31, 2008
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Rhoda Kinsella authored
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Rhoda Kinsella authored
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Rhoda Kinsella authored
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Bronwen Aken authored
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Ian Longden authored
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- Jul 29, 2008
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Andreas Kusalananda Kähäri authored
species_id column in the meta table. Unit-tests passes.
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Andreas Kusalananda Kähäri authored
database in new().
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Eugene Kulesha authored
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Glenn Proctor authored
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Rhoda Kinsella authored
Swap accession and label data in xref table and leave linkage_xref column blank for direct_xref table
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Rhoda Kinsella authored
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Glenn Proctor authored
Allow score column in protein_feature to be null. Needed for user upload and to be consistent with protein_align_feature and dna_align_feature.
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Glenn Proctor authored
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Eugene Kulesha authored
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Eugene Kulesha authored
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Eugene Kulesha authored
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Eugene Kulesha authored
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Eugene Kulesha authored
translation id can be passed when a new ProteinFeature is created so it can be later stored in the database (protein_feature table)
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Eugene Kulesha authored
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- Jul 28, 2008
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Daniel Rios authored
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