Commits · b1608d60e7bdfece7f8435f89c2a67a587ff2b26 · ensembl-gh-mirror / ensembl

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Jun 22, 2012
- removed duplicate store method · b1608d60
  Magali Ruffier authored 12 years ago
```
does not store density feature with value of 0
```
  b1608d60
- updated the help, the script now use "-pattern" to find a database instead of "-p". · 2f97d9c6
  Thomas Maurel authored 12 years ago
  
  2f97d9c6
May 10, 2012
- changes to provide multispecies support and also to use a unified command line... · ce96cdd8
  Dan Staines authored 12 years ago
```
changes to provide multispecies support and also to use a unified command line processor (CliHelper)
```
  ce96cdd8
Apr 11, 2012
- store density features in batch · ca683575
  Monika Komorowska authored 12 years ago
  
  ca683575
Dec 08, 2011
- Updated the help wrt the production database commandline arguments · eb827e26
  Arnaud Kerhornou authored 13 years ago
  
  eb827e26
Nov 30, 2011
- modified to add generic production database details · 83ed2b5f
  Uma Maheswari authored 13 years ago
  
  83ed2b5f
Nov 01, 2011
- populate analysis and analysis description if it's not already stored in the db · 3d13477a
  Monika Komorowska authored 13 years ago
  
  3d13477a
Sep 27, 2011
- Don't delete the analysis and analysis description entries, update analysis creation date · 8b658086
  Monika Komorowska authored 13 years ago
  
  8b658086
Jun 23, 2011
- Changes for submit_density_features.pl script · 43554d01
  Monika Komorowska authored 13 years ago
  
  43554d01
Dec 09, 2010
- lowercase logicname · e961591a
  Ensembl Account authored 14 years ago
  
  e961591a
May 11, 2010

Fixed bug that showed up on Y chromosome and problem with not deleting entries... · bb674e0b

Susan Fairley authored 14 years ago

Fixed bug that showed up on Y chromosome and problem with not deleting entries when no analysis description was present, see release 58 notes for more details.

bb674e0b

Feb 02, 2010
- Use "GC content" rather than "PercentGC" as display label. · 7f353cb9
  Andreas Kusalananda Kähäri authored 15 years ago
  
  7f353cb9
Nov 19, 2009
- update perl to /usr/local/ensembl/bin/perl · 087737f8
  Ian Longden authored 15 years ago
  
  087737f8
Mar 26, 2009
- remove entries from analysis_description using logic name instead of display label · 086f24d2
  Daniel Rios authored 16 years ago
  
  086f24d2
Apr 24, 2008
- Sort slices by their coordinate system rank, then by their length. Then · b6070b26
  Andreas Kusalananda Kähäri authored 16 years ago
```
process the first 100 of them.
```
  b6070b26
Apr 23, 2008
- Increase $long_slice_count from 100 to 125. Since the 'MT' chromosome · ddebf02c
  Andreas Kusalananda Kähäri authored 16 years ago
```
in human is number 118 in length, no gene, %gc, or SNP density features
were being calculated for it.
```
  ddebf02c
Sep 27, 2007
- Make sure the analysis_description is also deleted and properly · 6d7cf213
  Andreas Kusalananda Kähäri authored 17 years ago
```
reinstated.  The analysis_id in the analysis table and in the
analysis_description table seems to become unsynced otherwise.
```
  6d7cf213
Jan 31, 2007
- fixed problems with new density_type analysis_id updates · 36755131
  Damian Smedley authored 18 years ago
  
  36755131
Dec 19, 2006
- Now delete old features before starting to avoid creating duplicates. · 2e6c1646
  Glenn Proctor authored 18 years ago
  
  2e6c1646
Dec 13, 2006
- commited it by mistake · 756460ea
  Fiona Cunningham authored 18 years ago
  
  756460ea
- fixed bug in consequence type calculation · c8a04d40
  Fiona Cunningham authored 18 years ago
  
  c8a04d40
Nov 24, 2005
- use region features, removed small scale gc features to save time · b9242a6e
  Arne Stabenau authored 19 years ago
  
  b9242a6e
Aug 16, 2004
- db->prepare() => db->dbc()->prepare() · 692b4494
  Graham McVicker authored 20 years ago
  
  692b4494
May 21, 2004

store each density feature as it is created rather than building a list per... · 878bbdce

Graham McVicker authored 20 years ago

store each density feature as it is created rather than building a list per seq_region - smaller memory footprint (but repeats still leaking mem)

878bbdce

Mar 22, 2004
- all the same calling parameters, some database prechecks · 0ea929c4
  Arne Stabenau authored 21 years ago
  
  0ea929c4
Feb 17, 2004
- Examples for creating and reading density features. Three types are given.... · 09726695
  Ian Longden authored 21 years ago
```
Examples for creating and reading density features.  Three types are given. (%GC, %repeat and gene count)
```
  09726695