Attach SGD mapping to translation object rather than transcript objects, so GO mapping get also attach to translations. Commented STDERR statements;

Giving this the option to specify the default location which should help when using these. Also switch to env perl and used warnings explicitly rather than rely on #! lines

Adding an option to copy to a non standard location for use by teams who do not store their MySQL data in its data directory

is_canonical() can lazy-load the value from the database when it is unset & a dbID and an adaptor is available.

Store Clone_based_ensembl_gene descriptions last, to avoid an accession name conflict with Clone_based_vega_gene descriptions. Assign an HGNC name which hasn't been used if possible.

Don't remove core data if status is moved back to mapping_finished. Changes to alt_alleles: use the first non-reference gene if there is no reference gene in an alt_allele.