Commits · e59b6a8a222763f527be73752c3ebb80617ab504 · ensembl-gh-mirror / ensembl

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Jun 01, 2011
- *** empty log message *** · e59b6a8a
  Rhoda Kinsella authored 13 years ago
  
  e59b6a8a
- Added change to ZFIN regular expression for Corf gene names · 712e4b09
  Rhoda Kinsella authored 13 years ago
  
  712e4b09
May 26, 2011

CCDS -> Ensembl transcript is not a one to one mapping so cannot use a key... · b9458db0

Ian Longden authored 13 years ago

CCDS -> Ensembl transcript is not a one to one mapping so cannot use a key value pairs in hash. Hence now the hash uses a anonymous array to stire multiple values

b9458db0

May 25, 2011
- added / to uniprot search to make sure we do not link to uniprot_genename · 400b9e14
  Ian Longden authored 13 years ago
  
  400b9e14
May 24, 2011
- add the synonyms · 454cac5d
  Ian Longden authored 13 years ago
  
  454cac5d
- return the xref_id of the newly created xref · 82a2218d
  Ian Longden authored 13 years ago
  
  82a2218d
- print the number of synonyms added too as this is usefull · 6558f5cc
  Ian Longden authored 13 years ago
  
  6558f5cc
- better messages and tidy · 371f52bc
  Ian Longden authored 13 years ago
  
  371f52bc
- Added confirmation before overwriting a file. · 4baae37e
  Monika Komorowska authored 13 years ago
  
  4baae37e
- Tables are dumped out to a specified directory. · bf474587
  Monika Komorowska authored 13 years ago
  
  bf474587
- Set label to the description · c4e623e1
  Ian Longden authored 13 years ago
  
  c4e623e1
- Add synonyms · 95304162
  Ian Longden authored 13 years ago
  
  95304162
- fix for unmapped xref having possible multiple masters having same index · 16615a5a
  Ian Longden authored 13 years ago
  
  16615a5a
- set info_text to null instead of empty string · 09a6c22e
  Ian Longden authored 13 years ago
  
  09a6c22e
- Better messaging and tidy · d1180ed6
  Ian Longden authored 13 years ago
  
  d1180ed6
May 19, 2011
- *** empty log message *** · b90be6b4
  Monika Komorowska authored 13 years ago
  
  b90be6b4
- Fixed dump out option. · ab3ac58a
  Monika Komorowska authored 13 years ago
  
  ab3ac58a
May 18, 2011
- Added option to dump out backup tables. · 0b006002
  Monika Komorowska authored 13 years ago
  
  0b006002
- Script for killing mysql processes by db name pattern. · 473c7216
  Monika Komorowska authored 13 years ago
  
  473c7216
May 17, 2011
- changed ccds adatabases to be used · 00b8cd4b
  Ian Longden authored 13 years ago
  
  00b8cd4b
- do not remove MGI: from the stat only remove ZFIN_ID: and HGNC:. MGI number ... · 32e63746
  Ian Longden authored 13 years ago
```
do not remove MGI: from the stat only remove ZFIN_ID: and HGNC:.  MGI number  is stored with the MGI:
```
  32e63746
- changed floor to int for ease of use · 57206c8a
  Ian Longden authored 13 years ago
  
  57206c8a
- Changed percentage calculation in warnings. · 1e2e88a9
  Monika Komorowska authored 13 years ago
  
  1e2e88a9
- Ignore Projections in comparisons · ec28d5c3
  Ian Longden authored 13 years ago
  
  ec28d5c3
May 16, 2011
- Updated source ftp for pongo_abelii · e34841d4
  Monika Komorowska authored 13 years ago
  
  e34841d4
May 13, 2011
- Updated section on BasicMapper.pm · 79abdb8b
  Monika Komorowska authored 13 years ago
  
  79abdb8b
- Remove misleading print line · 930ed124
  Ian Longden authored 13 years ago
  
  930ed124
- use api_version to get the name of the vega and core databases to be used · ebaff21a
  Ian Longden authored 13 years ago
  
  ebaff21a
May 12, 2011
- Updated calculation of xref increase/decrease percentage · dff6968d
  Monika Komorowska authored 13 years ago
  
  dff6968d
- Remove extra ttype keyword at the end · 0085e26f
  Ian Longden authored 13 years ago
  
  0085e26f
May 11, 2011
- LRG transcripts. Removal of display_xref_ids, as these are not wanted · 1c382bb2
  Ian Longden authored 13 years ago
  
  1c382bb2
- Corrected error message. · 763ad269
  Monika Komorowska authored 13 years ago
  
  763ad269
- if a patch fails do not continue applying later patches as these could be dependent · c932298c
  Ian Longden authored 13 years ago
  
  c932298c
- Format change, so parsing altered accordingly · 7f9033d8
  Ian Longden authored 13 years ago
  
  7f9033d8
May 10, 2011
- RGD source file name change · 35acc7eb
  Ian Longden authored 13 years ago
  
  35acc7eb
- check if value is defined else set to \N · 5f9ce57d
  Ian Longden authored 13 years ago
  
  5f9ce57d
- Added sus_scrofa species. · 1b66494d
  Monika Komorowska authored 13 years ago
  
  1b66494d
May 05, 2011
- added puccinia triticina species · 8e7660f7
  Helder Pedro authored 13 years ago
  
  8e7660f7
- module for uniprot genename · 057797a0
  Helder Pedro authored 13 years ago
  
  057797a0
- Updated instructions for creating an ontology database · 36ab2d21
  Monika Komorowska authored 13 years ago
  
  36ab2d21