Explore projects

A solution to enable building and managing a Spark/Hadoop cluster on the EMBL-EBI Codon Slurm HPC cluster

eard compiler lib&cli; interpreter lib&cli; syntax highlighter; test suite; cli library stubs etc.

Pipelines to turn basic genomic data into Ensembl cores and back

Manuscript submission system project (Europe PMC plus)

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

Benchmarking dataset of PDB structures (various molecule types, experimental methods, weird cases etc.).

Image to update FPSim2 fingerprints table. It can be used in all our services.

Job that generates an image of a heatmap to use it as a guide for the visualisation.

This repo contains the code to analyse the data for assemblies manuscript

This is a repository to test the viability of using ChEBI Ontology + FastAPI + Robot in order to program the Advanced Search functionality.

This repo contains the code to analyse the data for assemblies manuscript

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies