This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

Terraform scripts for setting up a development environment in Embassy for the Marine Metagenomics folks

Core ingest service components, including minimal metadata representation and caching

Project that deploys a server with Swagger UI to show a live documentation for the delayed jobs

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

A script to check for broken links on the new EMBL.org

This project contains an API that serves as a proxy of elasticsearch for the interface. It handles the caching, usage statistics, contexts and standardisation of properties.

BioPython with some changes I am making in the Bio package to fit best to my projects

TSI Cloud Consultants Documentation https://tsi-ccdoc.readthedocs.io/en/master/

PDBeCIF is a lightweight pure python package for manipulating mmCIF formatted files distributed by the wwPDB. The package contains objects and modules for accessing mmCIF data. The documentation can be found at: http://pdbe.gitdocs.ebi.ac.uk/PDBeCIF/

EuropePMC Corpus of 300 articles for core entity types