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Django package containing chebi models.

Europe PMC Annotated Fulltext Corpus of 300 articles for core entity types (Gene/Proteins, Diseases and Species)

FunPDBe Validator client that can parse and validate FunPDBe JSON files

SMBGC detection tool

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

A library for locating and annotating plain text in HTML

This script provides a number of user enhancements to the default interface of RT at EBI, to enable quicker and easier management of tickets.

Ensembl 2020 client

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

Frontend code for the new version of ChEBI

A project to host reports and interactive visualisations for Europe PMC

Flat file format specification and java API for sequence data.

In this repository, I am going to share all the data and codes required to reproduce my library gene selection steps for the 2D CRISPR Project (Colorectal and Breast cancer cell lines)

Benchmarking dataset of PDB structures (various molecule types, experimental methods, weird cases etc.).