GitLab

This script provides a number of user enhancements to the default interface of RT at EBI, to enable quicker and easier management of tickets.

Django package containing chebi models.

ETL to migrate data from the old database to the new one

A library for locating and annotating plain text in HTML

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

FunPDBe Validator client that can parse and validate FunPDBe JSON files

The EMBL-EBI Visual Framework for websites and services.

NOTE - DO NOT COMMIT ANYTHING IN THIS REPO, THIS IS MIRROR REPO OF GITHUB. PLEASE COMMIT CHANGES, TAGGING IN GITHUB ONLY.

A basic Python-based EGA download client

Small molecules chemistry toolkit. Documentation is available at Gitlab pages: https://pdbe.gitdocs.ebi.ac.uk/ccdutils/

A JavaScript library for highlighting text based on the query in the lucene/solr query syntax

Ensembl 2020 client

No longer needed, as the code was merged with pdb-ligand-env component. This repository can be removed.

Interactive 2D display of ligands and their environment in protein structures. The testing version of the component is available from: http://pdbe.gitdocs.ebi.ac.uk/web-components/ligand-env

SMBGC detection tool

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

Flat file format specification and java API for sequence data.

Europe PMC Annotated Fulltext Corpus of 300 articles for core entity types (Gene/Proteins, Diseases and Species)