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This script provides a number of user enhancements to the default interface of RT at EBI, to enable quicker and easier management of tickets.
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Django package containing chebi models.
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ETL to migrate data from the old database to the new one
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A library for locating and annotating plain text in HTML
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CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.
context-spec... CRISPR gene function+ 1 more -
FunPDBe Validator client that can parse and validate FunPDBe JSON files
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The EMBL-EBI Visual Framework for websites and services.
NOTE - DO NOT COMMIT ANYTHING IN THIS REPO, THIS IS MIRROR REPO OF GITHUB. PLEASE COMMIT CHANGES, TAGGING IN GITHUB ONLY.
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A basic Python-based EGA download client
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Small molecules chemistry toolkit. Documentation is available at Gitlab pages: https://pdbe.gitdocs.ebi.ac.uk/ccdutils/
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A JavaScript library for highlighting text based on the query in the lucene/solr query syntax
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Ensembl 2020 client
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No longer needed, as the code was merged with pdb-ligand-env component. This repository can be removed.
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Interactive 2D display of ligands and their environment in protein structures. The testing version of the component is available from: http://pdbe.gitdocs.ebi.ac.uk/web-components/ligand-env
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SMBGC detection tool
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This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens
context-spec... CRISPR gene function+ 1 more -
Flat file format specification and java API for sequence data.
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Europe PMC Annotated Fulltext Corpus of 300 articles for core entity types (Gene/Proteins, Diseases and Species)