- Apr 15, 2013
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Andy Yates authored
[ENSCORESW-399] Fixing an issue reported from Steve Moss. We cause an exception because we do not check if we can project the cDNA location. Sometimes it is undefined.
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- Mar 25, 2013
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
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- Mar 22, 2013
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Andy Yates authored
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Arnaud Kerhornou authored
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- Mar 21, 2013
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Arnaud Kerhornou authored
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Andreas Kusalananda Kähäri authored
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Arnaud Kerhornou authored
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- Mar 20, 2013
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Andy Yates authored
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Andy Yates authored
removing the adding of species if they are in the force_speices list. unintented side effect of limiting it to just those force species
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Magali Ruffier authored
restriction on assembly or repeat mask changes should be enough, and we can have external groups (wormbase, ensemblgenomes) submitting new gene sets
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Arnaud Kerhornou authored
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William McLaren authored
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Andy Yates authored
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Andy Yates authored
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- Mar 19, 2013
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Magali Ruffier authored
also added url for zebrafish
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Magali Ruffier authored
this is not always the case, especially for ensembl genomes imported species now checks for the existence of go_xrefs instead
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Andy Yates authored
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Andy Yates authored
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Magali Ruffier authored
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
Adding better strand support (strands in bed are +/- not 1/-1) and not adding a value if one was not defined
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Andy Yates authored
Adding support for NCBI blast DB creation. This is not rolled into the main distro yet but is available as a separate pipeline. Existing indexers have had some functionality moved down the stack to avoid massive code duplication
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Andy Yates authored
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- Mar 18, 2013
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
We do not need proxies for this test. Having them actually causes it to go wrong. Deleted HTTP_PROXY and http_proxy from Perl ENV hash
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Kieron Taylor authored
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Kieron Taylor authored
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Dan Staines authored
New method store_batch_on_ for faster bulk storage of attributes. New modules GeneGCBatch and PepStatsBatch use this method. Updated test to include use of this method.
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Dan Staines authored
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- Mar 15, 2013
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Kieron Taylor authored
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Laurent Gil authored
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- Mar 12, 2013
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Magali Ruffier authored
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Magali Ruffier authored
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