Commits · 373dc1b4ffff0ab43a90a29bd0f9a52f9a1af536 · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated 8 minutes ago.

May 05, 2010
- simple building_block-only pipeline solutions · 373dc1b4
  Leo Gordon authored 14 years ago
  
  373dc1b4
- inputcmd mode added · 911193c3
  Leo Gordon authored 14 years ago
  
  911193c3
- adding parameters to make it ncRNA-pipeline ready · aab40464
  Leo Gordon authored 14 years ago
  
  aab40464
May 04, 2010
- bug fix · 5e7221af
  Leo Gordon authored 14 years ago
  
  5e7221af
- JobFactory is now able to run queries against external databases · e2ca5803
  Leo Gordon authored 14 years ago
  
  e2ca5803
- more parameters and comments · 8e12ee7e
  Leo Gordon authored 14 years ago
  
  8e12ee7e
May 03, 2010
- screen messages · 0f1d3c50
  Leo Gordon authored 14 years ago
  
  0f1d3c50
Apr 30, 2010
- this is old now, pretty old :) · 07ff3dff
  Leo Gordon authored 14 years ago
  
  07ff3dff
- allow to initialize sub-components that have never been seen directly... · a2462ba4
  Leo Gordon authored 14 years ago
```
allow to initialize sub-components that have never been seen directly (examples in Families pipeline)
```
  a2462ba4
- cosmetic · e0f86b8a
  Leo Gordon authored 14 years ago
  
  e0f86b8a
- README points at the new config modules · e90da0e9
  Leo Gordon authored 14 years ago
  
  e90da0e9
- cosmetic changes · e427ed3d
  Leo Gordon authored 14 years ago
  
  e427ed3d
- semaphored example as well · d7fc55f7
  Leo Gordon authored 14 years ago
  
  d7fc55f7
- use inheritance · e88ddc44
  Leo Gordon authored 14 years ago
  
  e88ddc44
- temporarily retained for compatibility · a81e62b7
  Leo Gordon authored 14 years ago
  
  a81e62b7
- support for parametric pipeline configuration · e6d18979
  Leo Gordon authored 14 years ago
  
  e6d18979
- destringificaton utility method added · c8354fe8
  Leo Gordon authored 14 years ago
  
  c8354fe8
Apr 28, 2010
- job creation via dataflow · 5b7bf3f3
  Leo Gordon authored 14 years ago
  
  5b7bf3f3
- two dataflows and one control · 3e43acf6
  Leo Gordon authored 14 years ago
  
  3e43acf6
Apr 27, 2010
- this surboutine has moved into the script · d1b1e60d
  Leo Gordon authored 14 years ago
  
  d1b1e60d
- let us use the config files for the time being · e3482f85
  Leo Gordon authored 14 years ago
  
  e3482f85
- nasty little bug · 5da408e6
  Leo Gordon authored 14 years ago
  
  5da408e6
Apr 26, 2010
- an example of using SqlCmd · 8d6aca93
  Leo Gordon authored 14 years ago
  
  8d6aca93
- allow for an "SQL session" to happen within one job execution · b7e0766e
  Leo Gordon authored 14 years ago
  
  b7e0766e
- let the user specify the target database connection parameters · 69751019
  Leo Gordon authored 14 years ago
  
  69751019
- stringification and evaluation of pipeline-wide(meta) parameters · f9d59309
  Leo Gordon authored 14 years ago
  
  f9d59309
- better parameters for stringification · 2f98ea58
  Leo Gordon authored 14 years ago
  
  2f98ea58
- typo in a remark · ecffbe8a
  Leo Gordon authored 14 years ago
  
  ecffbe8a
Mar 30, 2010
- this change should speed everything up · e2104d1e
  Leo Gordon authored 15 years ago
  
  e2104d1e
Mar 26, 2010
- be more flexible and allow input format variations for rules · 0656dc9e
  Leo Gordon authored 15 years ago
  
  0656dc9e
- "dataflow made friendly", untested · 048df0fb
  Leo Gordon authored 15 years ago
  
  048df0fb
Mar 24, 2010
- full name for family_pipeline.conf · 41864ab2
  Leo Gordon authored 15 years ago
  
  lg4_pre_rel58_20090322
  
  41864ab2
Mar 23, 2010
- fixing a bug introduced by changing init_pipeline script · b0a8c2c4
  Leo Gordon authored 15 years ago
  
  b0a8c2c4
- adding a new flow_into format, but still supporting the old one · 824dc0d6
  Leo Gordon authored 15 years ago
  
  824dc0d6
- some users are concerned about "bsub" command crashing; now this should cause the beekeeper to exit · 4e594fa1
  Leo Gordon authored 15 years ago
  
  4e594fa1
- a rename suggested by Pablo · bcda450d
  Leo Gordon authored 15 years ago
  
  bcda450d
- allow to return a hashref - suggested by Pablo · 1b576c21
  Leo Gordon authored 15 years ago
  
  1b576c21
Mar 22, 2010
- new changes before release 58 production start · f68498d6
  Leo Gordon authored 15 years ago
  
  f68498d6
Mar 19, 2010
- user request: to allow the at-sign in the password and still parse the url correctly · 49c94ddd
  Leo Gordon authored 15 years ago
  
  49c94ddd
- renamed lsf_options into meadow_options - more general · 25972a67
  Leo Gordon authored 15 years ago
  
  25972a67