This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git.
Pull mirroring failed .
Repository mirroring has been paused due to too many failed attempts. It can be resumed by a project maintainer or owner.
Last successful update .
Repository mirroring has been paused due to too many failed attempts. It can be resumed by a project maintainer or owner.
Last successful update .
- Aug 07, 2012
-
-
Monika Komorowska authored
-
Monika Komorowska authored
-
Monika Komorowska authored
no need to override method transcript_display_xref_sources - diplay xrefs are done in OfficialNaming.pm for zebrafish
-
- Aug 06, 2012
-
-
Magali Ruffier authored
-
Andy Yates authored
Two commits. First is to use a custom factory to let us default to embl, genbank dumps and allow user override [ENSCORESW-226]. Secondly our pipeline was not RC_NAME friendly. We now inherit the default options from hive generic conf and add our own [ENSCORESW-225]
-
Andy Yates authored
-
Andy Yates authored
[ENSCORESW-224]. Fix for multi-line SQ lines caused by large sequences being pushed through SeqDumper. Was never an issue before as our slices were never big enough. Applied the same fix to Genbank but it should be less of an issue due to it's formatting meaning we need larger slices to cause the issue.
-
- Aug 04, 2012
-
-
Monika Komorowska authored
-
Monika Komorowska authored
-
- Aug 03, 2012
-
-
Kieron Taylor authored
Added a single warning for running without a CCDS database, and provided an exit for certain no-data situations.
-
Kieron Taylor authored
Tests null cases and basic functioning of sorting algorithm.
-
Kieron Taylor authored
New utility object for finding canonical transcripts. Refactoring of "set_canonical_transcript.pl" logic.
-
- Aug 02, 2012
-
-
Magali Ruffier authored
-
Magali Ruffier authored
-
Kieron Taylor authored
-
Andy Yates authored
-
Magali Ruffier authored
-
Magali Ruffier authored
-
Magali Ruffier authored
-
Magali Ruffier authored
-
Magali Ruffier authored
-
Monika Komorowska authored
added method remove_source_priorities; it's called from xref_mapper.pl when option -recalc_display_xrefs is used
-
Monika Komorowska authored
changed option -recalc_display_xrefs to boolean, it wasn't possible to recalculate display xrefs without using the xref db
-
Magali Ruffier authored
slight memory requirement adjustements as well
-
Magali Ruffier authored
-
Magali Ruffier authored
-
- Aug 01, 2012
-
-
Monika Komorowska authored
-
Monika Komorowska authored
-
Monika Komorowska authored
-
Monika Komorowska authored
-
Magali Ruffier authored
-
Monika Komorowska authored
-
Monika Komorowska authored
set_display_xrefs deleted, no need to override this method as gene and transcript display xrefs are set separately in DisplayXrefs.pm
-
Monika Komorowska authored
-
Monika Komorowska authored
-
Monika Komorowska authored
-
Magali Ruffier authored
can be run across several hosts at a time
-
Monika Komorowska authored
-
- Jul 31, 2012
-
-
Andy Yates authored
[ENSCORESW-220]. Being removed in favor of our new generate_default_aliases.pl code for the production DB.
-
Andy Yates authored
-