This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated .
  1. 25 Nov, 2013 1 commit
  2. 23 Nov, 2013 1 commit
  3. 22 Nov, 2013 5 commits
  4. 18 Nov, 2013 1 commit
    • Magali Ruffier's avatar
      updated README · 397d6b07
      Magali Ruffier authored
      stable id lookup now also contains an archive_id_lookup table, which stores retired stable ids
      also reduced the required memory
      for release 74 and 66 species, it ran with less than 600Mb, no need to request 1.5G
      397d6b07
  5. 15 Nov, 2013 8 commits
  6. 14 Nov, 2013 3 commits
  7. 12 Nov, 2013 5 commits
  8. 11 Nov, 2013 4 commits
    • Magali Ruffier's avatar
      new method store_multiple_mapping_path · 9f6ad393
      Magali Ruffier authored
      same as store_mapping_path, but for multiple mappings
      a multiple mapping is needed when a single component can be mapped to multiple assembled regions
      this uses the '#' operator instead of the '|' for the mapping key
      9f6ad393
    • Magali Ruffier's avatar
      default version is NULL, not an empty string · 56490901
      Magali Ruffier authored
      requires a number of updates to methods when adding/fetching mapping_path
      methods used to create mapping_keys as name1:version1|name2:version2
      if there is no version, do not add ':' either
      for add_mapping_path method, do not sort list of coord systems by rank
      first argument is the assembled, second argument is the component, regardless of rank
      56490901
    • Magali Ruffier's avatar
      updated test case with is calls replacing ok · b7a5933d
      Magali Ruffier authored
      also, when adding_mapping_path, do not expect the method to order coord systems by rank, it will use the first argument as assembled, the second argument as component
      b7a5933d
    • Magali Ruffier's avatar
      added fetch_assembly method · 74d53a7f
      Magali Ruffier authored
      works similar to store_assembly, used to check if assembly entry already exists between 2 slices before attempting to store
      also corrected typo in store_assembly method, table used is assembly, not analysis
      74d53a7f
  9. 08 Nov, 2013 1 commit
  10. 07 Nov, 2013 1 commit
  11. 05 Nov, 2013 1 commit
  12. 31 Oct, 2013 2 commits
  13. 30 Oct, 2013 2 commits
  14. 29 Oct, 2013 2 commits
  15. 25 Oct, 2013 1 commit
  16. 24 Oct, 2013 2 commits