Commits · f5bccefc411350bbe48a8d198c7ba1c529713685 · ensembl-gh-mirror / ensembl

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Mar 19, 2010
- Updated web_data column for Gorilla_RNA-Seq. Models should be displayed · f5bccefc
  Amy Tang authored 15 years ago
```
from the gene table, not dna_align_feature table.
```
  f5bccefc
Mar 18, 2010
- added human_cdna2genome analysis description · 5b9d0286
  Magali Ruffier authored 15 years ago
  
  5b9d0286
- removed as never used and just confusing · 09ff91f0
  Ian Longden authored 15 years ago
  
  09ff91f0
- no longer used. just confusing having it here · b94a0f50
  Ian Longden authored 15 years ago
  
  b94a0f50
- no longer used · 9ddca451
  Ian Longden authored 15 years ago
  
  9ddca451
Mar 17, 2010
- whitespace, remove old Glovar method! · e1f51a8b
  Steve Trevanion authored 15 years ago
  
  e1f51a8b
Mar 16, 2010
- Fix for split_Slices seq_region_lenght should be for the whole seq region not just for the slice · 7919b913
  Ian Longden authored 15 years ago
  
  7919b913
- Update API version to 58. · dd64a05e
  Andreas Kusalananda Kähäri authored 15 years ago
  
  dd64a05e
Mar 15, 2010
- Added WTSI_gorilla_transcriptome external DB · a4be7075
  Amy Tang authored 15 years ago
  
  a4be7075
- Remove DEFAULT values for TEXT fields as these fields can not have · 0e4403e2
  Andreas Kusalananda Kähäri authored 15 years ago
```
DEFAULT values.  No schema patch file necessary.
```
  0e4403e2
- When creating tables, use the "ENGINE=MyISAM" table options rather than · 442c1e60
  Andreas Kusalananda Kähäri authored 15 years ago
```
the depricated table option "TYPE=MyISAM".
```
  442c1e60
- Update the schema for release 58. · f9b3dc25
  Andreas Kusalananda Kähäri authored 15 years ago
  
  f9b3dc25
- Add the schema version patch for release 58. · e7ebba92
  Andreas Kusalananda Kähäri authored 15 years ago
  
  e7ebba92
Mar 12, 2010
- When looking for exonerate output files, don't treat an empty file as · 51132416
  Andreas Kusalananda Kähäri authored 15 years ago
```
"missing".
```
  51132416
- replaced a space delimiter by a tab delimiter at line 267 · bcb22783
  Arnaud Kerhornou authored 15 years ago
  
  bcb22783
- Penalize genes jumping to new biotypes harder (0.8 --> 0.5). · d9081608
  Andreas Kusalananda Kähäri authored 15 years ago
  
  d9081608
Mar 10, 2010
- Changed NMD transcript consequence so it is distinct · a99d3fec
  William McLaren authored 15 years ago
  
  a99d3fec
Mar 09, 2010
- Updates for ensembl genomes supplied by Arnaud Kerhornou (arnaud@ebi.ac.uk). · 53c932f3
  Susan Fairley authored 15 years ago
  
  53c932f3
Mar 08, 2010
- Add distance to aux% tables. · 21a52cc1
  Andreas Kusalananda Kähäri authored 15 years ago
  
  21a52cc1
- Correct. · d69db672
  Andreas Kusalananda Kähäri authored 15 years ago
  
  d69db672
- Fixed type for Gorilla_RNA-Seq analysis · 4797247d
  Amy Tang authored 15 years ago
  
  4797247d
Mar 05, 2010
- updated gorilla_RNA-Seq · 15649612
  Amy Tang authored 15 years ago
  
  15649612
- Added gorilla_RNA-Seq analysis · 21464266
  Amy Tang authored 15 years ago
  
  21464266
- Added NMD transcript consequence support · 83a6b3d4
  William McLaren authored 15 years ago
  
  83a6b3d4
- Added get_all_VariationFeatures_by_Population method · 6d61c54a
  William McLaren authored 15 years ago
  
  6d61c54a
Mar 03, 2010
- remove test causing warnings that are not needed · 66786cd7
  Ian Longden authored 15 years ago
  
  66786cd7
Mar 01, 2010
- sub feature_Slice should return a strain slice if the feature was on a strain slice. · 6054ac3c
  Ian Longden authored 15 years ago
  
  6054ac3c
- add strain info to the cache key if the slice is a StrainSlice to stop chaching problems · a65e2c66
  Ian Longden authored 15 years ago
  
  a65e2c66
- Added new tables and columns, removed old ones (e.g. oligo_*) · a991458b
  Glenn Proctor authored 15 years ago
  
  a991458b
Feb 25, 2010
- typo · dce6c569
  Steve Trevanion authored 15 years ago
  
  dce6c569
- When creating the aux_XX_YY_map tables, map XX ontology terms to *all* · 18df072b
  Andreas Kusalananda Kähäri authored 15 years ago
```
ancestors within the YY subset (not just the closest one(s)).  Suggested
by Paul K.
```
  18df072b
- Modifications to pep2genomic() from Daniel, with only minor adjustments. · 89fefbab
  Andreas Kusalananda Kähäri authored 15 years ago
  
  89fefbab
- add rank. this is needed for multiple assemblys · 4218936f
  Ian Longden authored 15 years ago
  
  4218936f
- create LRGSlice when needed · 2a8e4146
  Ian Longden authored 15 years ago
  
  2a8e4146
- check for rna_edit is within the region of interest · 57d73b5a
  Ian Longden authored 15 years ago
  
  57d73b5a
- get fetch all to ignore LRG_gene this makes it slower but if you are getting... · 3f19b86f
  Ian Longden authored 15 years ago
```
get fetch all to ignore LRG_gene this makes it slower but if you are getting all the them then this will be insignificant time difference
```
  3f19b86f
- remove the over zealous warning. This is actually okay · 432724ea
  Ian Longden authored 15 years ago
  
  432724ea
- use the rank to check for multiple asemblys and deal with it appropriately · 51fbe135
  Ian Longden authored 15 years ago
  
  51fbe135
- tidy up mainly · bdbab60f
  Ian Longden authored 15 years ago
  
  bdbab60f
- if more than one projection then check against the slcie you are projecting... · 663c40be
  Ian Longden authored 15 years ago
```
if more than one projection then check against the slcie you are projecting too to make sure it is the corect one. This is for multiple assemblys where a feature can go to nmore then one slice
```
  663c40be