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ensembl-gh-mirror
Merge requests

Open 11
Merged 1,904
Closed 363
All 2,278

Duplicate all methods that relate to individual data in a VCF file.

ensembl-io!9 · created May 19, 2015 by Marek Szuba master
- Merged
- 0
updated May 19, 2015
add non_ref_only option when fetching genotypes

ensembl-io!10 · created Jun 01, 2015 by Marek Szuba master
- Merged
- 0
updated Jun 02, 2015
Non-extended summary retrieval for BigWigs.

ensembl-io!8 · created Apr 13, 2015 by Marek Szuba master
- Merged
- 0
updated Apr 23, 2015
Fix trackDb absolute url bug.

ensembl-io!7 · created Apr 07, 2015 by Marek Szuba master
- Merged
- 0
updated Apr 08, 2015
Update BaseVCF4.pm

ensembl-io!12 · created Jun 18, 2015 by Marek Szuba master
- Closed
- 4
updated Aug 20, 2015
fix for slightly clumsy passing of args to synonym methods

ensembl-io!11 · created Jun 02, 2015 by Marek Szuba master
- Merged
- 0
updated Jun 02, 2015
fix when individual_ids not defined

ensembl-io!6 · created Mar 30, 2015 by Marek Szuba release/79
- Merged
- 0
updated Mar 30, 2015
don't assume diploid

ensembl-io!4 · created Oct 29, 2014 by Marek Szuba variation
- Merged
- 0
updated Oct 29, 2014
Add some new features and fixes for the VCF backend code in the Variation API

ensembl-io!2 · created Oct 08, 2014 by Marek Szuba variation
- Merged
- 0
updated Oct 08, 2014
fix misuse of get_alternatives in get_start

ensembl-io!3 · created Oct 24, 2014 by Marek Szuba variation
- Merged
- 0
updated Oct 24, 2014
Feature/blast parser

ensembl-io!1 · created Jul 11, 2014 by Marek Szuba master
- Merged
- 0
updated Dec 17, 2018
fix when individual_ids not defined

ensembl-io!5 · created Mar 30, 2015 by Marek Szuba master
- Merged
- 0
updated Mar 30, 2015
added MKG in location validation

ensembl!120 · created Feb 19, 2016 by Marek Szuba master
- Merged
- 2
updated Feb 25, 2016
Refcount-based fix for index memory releasing problem

Bio-DB-HTS!68 · created Mar 20, 2018 by Marek Szuba master
- Merged
- 5
updated Mar 20, 2018
Protein Feature patch

ensembl!181 · created Jan 27, 2017 by Marek Szuba master
- Merged
- 11
updated Feb 01, 2017
Add fuzzy matching on synonyms

ensembl!152 · created Sep 20, 2016 by Marek Szuba master
- Merged
- 2
updated Sep 20, 2016
s/localtime/gmtime/ for successful tests down under.

ensembl!354 · created Jan 10, 2019 by Marek Szuba master
- Merged
- 1
updated Jan 21, 2019
Ignore .gzi index files and clean test output files

Bio-DB-HTS!84 · created Feb 22, 2019 by Marek Szuba master
- Merged
- 1
updated Feb 22, 2019
Reuse bcf_get_info/_format API buffers

Bio-DB-HTS!83 · created Feb 22, 2019 by Marek Szuba master
- Merged
- 7
updated Feb 22, 2019
Corrected copyright updater to deal with multi format licenses

ensembl!134 · created Jun 02, 2016 by Marek Szuba master
- Merged
- 4
updated Sep 13, 2016

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