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- Aug 04, 2012
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Monika Komorowska authored
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Monika Komorowska authored
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- Aug 03, 2012
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Kieron Taylor authored
Added a single warning for running without a CCDS database, and provided an exit for certain no-data situations.
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Kieron Taylor authored
Tests null cases and basic functioning of sorting algorithm.
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Kieron Taylor authored
New utility object for finding canonical transcripts. Refactoring of "set_canonical_transcript.pl" logic.
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- Aug 02, 2012
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Magali Ruffier authored
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Magali Ruffier authored
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Kieron Taylor authored
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Andy Yates authored
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Magali Ruffier authored
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Magali Ruffier authored
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Magali Ruffier authored
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Magali Ruffier authored
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Magali Ruffier authored
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Monika Komorowska authored
added method remove_source_priorities; it's called from xref_mapper.pl when option -recalc_display_xrefs is used
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Monika Komorowska authored
changed option -recalc_display_xrefs to boolean, it wasn't possible to recalculate display xrefs without using the xref db
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Magali Ruffier authored
slight memory requirement adjustements as well
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Magali Ruffier authored
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Magali Ruffier authored
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- Aug 01, 2012
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Monika Komorowska authored
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Monika Komorowska authored
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Monika Komorowska authored
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Monika Komorowska authored
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Magali Ruffier authored
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Monika Komorowska authored
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Monika Komorowska authored
set_display_xrefs deleted, no need to override this method as gene and transcript display xrefs are set separately in DisplayXrefs.pm
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Monika Komorowska authored
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Monika Komorowska authored
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Monika Komorowska authored
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Magali Ruffier authored
can be run across several hosts at a time
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Monika Komorowska authored
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- Jul 31, 2012
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Andy Yates authored
[ENSCORESW-220]. Being removed in favor of our new generate_default_aliases.pl code for the production DB.
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Andy Yates authored
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Monika Komorowska authored
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Andreas Kusalananda Kähäri authored
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Monika Komorowska authored
delete records from display_xref_priority and gene_desc_priority when status is reset to parsing_finished or mapping_finished
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Magali Ruffier authored
added option run_all to run even if there has been no change to the species
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Magali Ruffier authored
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Monika Komorowska authored
added tables display_xref_priority and gene_desc_priority - they are used in DisplayXrefs.pm http://www.ebi.ac.uk/panda/jira/browse/ENSCORESW-219
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Monika Komorowska authored
changes to set_display_xrefs and set_gene_descriptions http://www.ebi.ac.uk/panda/jira/browse/ENSCORESW-219
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